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Nov 7, 2008

Gene Therapy for Cancer: Questions and Answers

Key Points
Gene therapy is an experimental treatment that involves introducing genetic material into a person's cells to fight or prevent disease (see Question 2).

Researchers are studying gene therapy for cancer through a number of different approaches (see Question 3).

A gene can be delivered to a cell using a carrier known as a “vector.” The most common types of vectors used in gene therapy are viruses (see Question 4).

The viruses used in gene therapy are altered to make them safe; however, some risks still exist with gene therapy (see Questions 5 and 6).

A clinical trial using gene therapy must be approved by at least two review boards at the scientists’ institution, as well as by the U.S. Food and Drug Administration and the National Institutes of Health Recombinant DNA Advisory Committee (see Questions 9 and 10).

The Ethical, Legal, and Social Implications (ELSI) Research Program was established in 1990 to identify, analyze, and address the implications of human genetics research (see Questions 11 and 12).

What are genes? Genes are the biological units of heredity. Genes determine obvious traits, such as hair and eye color, as well as more subtle characteristics, such as the ability of the blood to carry oxygen. Complex characteristics, such as physical strength, may be shaped by the interaction of a number of different genes along with environmental influences.

Genes are located on chromosomes inside cells and are made of deoxyribonucleic acid (DNA), which is a type of biological molecule. Humans have between 30,000 and 40,000 genes. Genes carry the instructions that allow cells to produce specific proteins, such as enzymes.

To make proteins, a cell must first copy the information stored in genes into another type of biological molecule called ribonucleic acid (RNA). The cell's protein synthesizing machinery then decodes the information in the RNA to manufacture specific proteins. Only certain genes in a cell are active at any given moment. As cells mature, many genes become permanently inactive. The pattern of active and inactive genes in a cell and the resulting protein composition determine what kind of cell it is and what it can and cannot do. Flaws in genes can result in disease.

What is gene therapy?

Advances in understanding and manipulating genes have set the stage for scientists to alter a person's genetic material to fight or prevent disease. Gene therapy is an experimental treatment that involves introducing genetic material (DNA or RNA) into a person's cells to fight disease. Gene therapy is being studied in clinical trials (research studies with people) for many different types of cancer and for other diseases. It is not currently available outside a clinical trial.

How is gene therapy being studied in the treatment of cancer?

Researchers are studying several ways to treat cancer using gene therapy. Some approaches target healthy cells to enhance their ability to fight cancer. Other approaches target cancer cells, to destroy them or prevent their growth. Some gene therapy techniques under study are described below.

In one approach, researchers replace missing or altered genes with healthy genes. Because some missing or altered genes (e.g., p53) may cause cancer, substituting “working” copies of these genes may be used to treat cancer. Researchers are also studying ways to improve a patient's immune response to cancer. In this approach, gene therapy is used to stimulate the body's natural ability to attack cancer cells. In one method under investigation, researchers take a small blood sample from a patient and insert genes that will cause each cell to produce a protein called a T-cell receptor (TCR). The genes are transferred into the patient's white blood cells (called T lymphocytes) and are then given back to the patient. In the body, the white blood cells produce TCRs, which attach to the outer surface of the white blood cells. The TCRs then recognize and attach to certain molecules found on the surface of the tumor cells. Finally, the TCRs activate the white blood cells to attack and kill the tumor cells.

Scientists are investigating the insertion of genes into cancer cells to make them more sensitive to chemotherapy, radiation therapy, or other treatments. In other studies, researchers remove healthy blood-forming stem cells from the body, insert a gene that makes these cells more resistant to the side effects of high doses of anticancer drugs, and then inject the cells back into the patient. In another approach, researchers introduce “suicide genes” into a patient's cancer cells. A pro-drug (an inactive form of a toxic drug) is then given to the patient. The pro-drug is activated in cancer cells containing these “suicide genes, ” which leads to the destruction of those cancer cells.

Other research is focused on the use of gene therapy to prevent cancer cells from developing new blood vessels (angiogenesis).

How are genes transferred into cells so that gene therapy can take place?

In general, a gene cannot be directly inserted into a person's cell. It must be delivered to the cell using a carrier, or “vector.” The vectors most commonly used in gene therapy are viruses. Viruses have a unique ability to recognize certain cells and insert genetic material into them. In some gene therapy clinical trials, cells from the patient's blood or bone marrow are removed and grown in the laboratory. The cells are exposed to the virus that is carrying the desired gene. The virus enters the cells and inserts the desired gene into the cells’ DNA. The cells grow in the laboratory and are then returned to the patient by injection into a vein. This type of gene therapy is called ex vivo because the cells are grown outside the body. The gene is transferred into the patient's cells while the cells are outside the patient's body.

In other studies, vectors (often viruses) or liposomes (fatty particles) are used to deliver the desired gene to cells in the patient's body. This form of gene therapy is called in vivo, because the gene is transferred to cells inside the patient's body.

What types of viruses are used in gene therapy, and how can they be used safely?

Many gene therapy clinical trials rely on retroviruses to deliver the desired gene. Other viruses used as vectors include adenoviruses, adeno-associated viruses, lentiviruses, poxviruses, and herpes viruses. These viruses differ in how well they transfer genes to the cells they recognize and are able to infect, and whether they alter the cell's DNA permanently or temporarily. Thus, researchers may use different vectors, depending on the specific characteristics and requirements of the study.

Scientists alter the viruses used in gene therapy to make them safe for humans and to increase their ability to deliver specific genes to a patient's cells. Depending on the type of virus and the goals of the research study, scientists may inactivate certain genes in the viruses to prevent them from reproducing or causing disease. Researchers may also alter the virus so that it better recognizes and enters the target cell.

What risks are associated with current gene therapy trials?

Viruses can usually infect more than one type of cell. Thus, when viral vectors are used to carry genes into the body, they might infect healthy cells as well as cancer cells. Another danger is that the new gene might be inserted in the wrong location in the DNA, possibly causing harmful mutations to the DNA or even cancer.

In addition, when viruses or liposomes are used to deliver DNA to cells inside the patient's body, there is a slight chance that this DNA could unintentionally be introduced into the patient's reproductive cells. If this happens, it could produce changes that may be passed on if a patient has children after treatment.

Other concerns include the possibility that transferred genes could be “overexpressed,” producing so much of the missing protein as to be harmful; that the viral vector could cause inflammation or an immune reaction; and that the virus could be transmitted from the patient to other individuals or into the environment. Scientists use animal testing and other precautions to identify and avoid these risks before any clinical trials are conducted in humans.

What major problems must scientists overcome before gene therapy becomes a common technique for treating disease?

Scientists need to identify more efficient ways to deliver genes to the body. To treat cancer and other diseases effectively with gene therapy, researchers must develop vectors that can be injected into the patient and specifically focus on the target cells located throughout the body. More work is also needed to ensure that the vectors will successfully insert the desired genes into each of these target cells.

Researchers also need to be able to deliver genes consistently to a precise location in the patient's DNA, and ensure that transplanted genes are precisely controlled by the body's normal physiologic signals.

Although scientists are working hard on these problems, it is impossible to predict when they will have effective solutions.

The first disease approved for treatment with gene therapy was adenosine deaminase (ADA) deficiency. What is this disease and why was it selected?

ADA deficiency is a rare genetic disease. The normal ADA gene produces an enzyme called adenosine deaminase, which is essential to the body's immune system. Patients with ADA deficiency do not have normal ADA genes and do not produce functional ADA enzymes. ADA-deficient children are born with severe immunodeficiency and are prone to repeated serious infections, which may be life-threatening. Although ADA deficiency can be treated with a drug called PEG-ADA, the drug is extremely costly and must be taken for life by injection into a vein.

ADA deficiency was selected for the first approved human gene therapy trial for several reasons: The disease is caused by a defect in a single gene, which increases the likelihood that gene therapy will succeed.

The gene is regulated in a simple, “always-on” fashion, unlike many genes whose regulation is complex. The amount of ADA present does not need to be precisely regulated. Even small amounts of the enzyme are known to be beneficial, while larger amounts are also tolerated well.

How do gene therapy trials receive approval?

A proposed gene therapy trial, or protocol, must be approved by at least two review boards at the scientists’ institution. Gene therapy protocols must also be approved by the U.S. Food and Drug Administration (FDA), which regulates all gene therapy products. In addition, trials that are funded by the National Institutes of Health (NIH) must be registered with the NIH Recombinant DNA Advisory Committee (RAC). The NIH, which includes 27 Institutes and Centers, is the Federal focal point for biomedical research in the United States.

Why are there so many steps in this process?

Any studies involving humans must be reviewed with great care. Gene therapy in particular is potentially a very powerful technique, is relatively new, and could have profound implications. These factors make it necessary for scientists to take special precautions with gene therapy.

What are some of the social and ethical issues surrounding human gene therapy?

In large measure, the issues are the same as those faced whenever a powerful new technology is developed. Such technologies can accomplish great good, but they can also result in great harm if applied unwisely.

Gene therapy is currently focused on correcting genetic flaws and curing life-threatening disease, and regulations are in place for conducting these types of studies. But in the future, when the techniques of gene therapy have become simpler and more accessible, society will need to deal with more complex questions.

One such question is related to the possibility of genetically altering human eggs or sperm, the reproductive cells that pass genes on to future generations. (Because reproductive cells are also called germ cells, this type of gene therapy is referred to as germ-line therapy.) Another question is related to the potential for enhancing human capabilities—for example, improving memory and intelligence—by genetic intervention. Although both germ-line gene therapy and genetic enhancement have the potential to produce benefits, possible problems with these procedures worry many scientists. Germ-line gene therapy would forever change the genetic makeup of an individual's descendants. Thus, the human gene pool would be permanently affected. Although these changes would presumably be for the better, an error in technology or judgment could have far-reaching consequences. The NIH does not approve germ-line gene therapy in humans.

In the case of genetic enhancement, there is concern that such manipulation could become a luxury available only to the rich and powerful. Some also fear that widespread use of this technology could lead to new definitions of “normal” that would exclude individuals who are, for example, of merely average intelligence. And, justly or not, some people associate all genetic manipulation with past abuses of the concept of “eugenics,” or the study of methods of improving genetic qualities through selective breeding.

What is being done to address these social and ethical issues?

Scientists working on the Human Genome Project (HGP), which completed mapping and sequencing all of the genes in humans, recognized that the information gained from this work would have profound implications for individuals, families, and society. The Ethical, Legal, and Social Implications (ELSI) Research Program was established in 1990 as part of the HGP to address these issues. The ELSI Research Program fosters basic and applied research on the ethical, legal, and social implications of genetic and genomic research for individuals, families, and communities. The ELSI Research Program sponsors and manages studies and supports workshops, research consortia, and policy conferences on these topics. More information about the HGP and the ELSI Research Program can be found on the National Human Genome Research Institute (NHGRI) Web site at http://www.genome.gov on the Internet.

You and Your Genes

You and your genes.

Play the DNA - The Double Helix Game (Nobel Foundation) - Requires Flash Player

DNA - The Double Helix

In the beginning of the 1950s, biologists knew that DNA carried the hereditary message. But how? The DNA molecule looks like a spiral ladder where the rungs are formed by base molecules, which occur in pairs. These sequences of base pairs represent the genetic information. In the game below, you can make copies of DNA molecules and find out which organism the genetic material belongs to!

Play the DNA - The Double Helix Game

See also:
Read More: The Discovery of the Molecular Structure of DNA – The Double Helix »

Stool DNA and Occult Blood Testing to Screen for Colorectal Neoplasia

7 October 2008 | Volume 149 Issue 7 | Page I-20
Summaries for Patients are a service provided by Annals to help patients better understand the complicated and often mystifying language of modern medicine.

Summaries for Patients are presented for informational purposes only. These summaries are not a substitute for advice from your own medical provider. If you have questions about this material, or need medical advice about your own health or situation, please contact your physician. The summaries may be reproduced for not-for-profit educational purposes only. Any other uses must be approved by the American College of Physicians.
The summary below is from the full report titled "Stool DNA and Occult Blood Testing for Screen Detection of Colorectal Neoplasia." It is in the 7 October 2008 issue of Annals of Internal Medicine (volume 149, pages 441-450). The authors are D.A. Ahlquist, D.J. Sargent, C.L. Loprinzi, T.R. Levin, D.K. Rex, D.J. Ahnen, K. Knigge, M.P. Lance, L.J. Burgart, S.R. Hamilton, J.E. Allison, M.J. Lawson, M.E. Devens, J.J. Harrington, and S.L. Hillman.

What is the problem and what is known about it so far?

Colorectal cancer arises from the lining of the colon. It causes more deaths than any other type of cancer except lung cancer, but it is curable if detected and removed before it spreads to other organs. Fortunately, colon cancer develops from growths called polyps, which do not spread to other organs but are detectable by imaging tests, such as radiography; inspecting the surface of the colon through a flexible tube (colonoscopy); and testing the stool for substances released from polyps and cancers. Polyps take 5 to 10 years to become cancerous. Abnormalities in DNA from cells in a polyp cause the cells to lose control of division, which allows the polyp to become larger. Additional DNA abnormalities occur that allow cancer cells to invade the rest of the body. Polyps and cancer constantly shed cells into the stool, and it is possible to detect the mutations that cause polyps to grow and become malignant. The tests are called stool DNA tests.

Why did the researchers do this particular study?

To see whether stool DNA tests detected more polyps and cancers than did tests for blood in the stool, a well-proven colon cancer screening test.

Who was studied?

3764 healthy adults with an average risk for colon cancer.

How was the study done?

The study participants collected samples of stool at home and sent them to a laboratory that tested for hidden blood. Another laboratory tested the stool to see whether it contained DNA abnormalites associated with polyps or cancer. The laboratory used 2 tests, which were designed to detect different gene abnormalities. Everybody had colonoscopy, the most reliable test for colon polyps and cancer.

What did the researchers find?

The best test for blood in the stool detected 21% of the cases of cancer and most worrisome types of polyps. The older of the 2 stool DNA tests (called SDT-1) detected 20% of cases of cancer. The newer stool DNA test (called SDT-2) detected 40% of the cases of cancer and most worrisome types of polyps.

What were the limitations of the study?

The researchers did not measure the frequency of positive SDT-2 tests in all patients who did not have worrisome polyps or cancer (false-positive results).

What are the implications of the study?

Testing stool for DNA abnormalities that control cell growth is a promising way to screen for colon polyps and cancer.

Related articles in Annals:
Articles
Stool DNA and Occult Blood Testing for Screen Detection of Colorectal Neoplasia
David A. Ahlquist, Daniel J. Sargent, Charles L. Loprinzi, Theodore R. Levin, Douglas K. Rex, Dennis J. Ahnen, Kandice Knigge, M. Peter Lance, Lawrence J. Burgart, Stanley R. Hamilton, James E. Allison, Michael J. Lawson, Mary E. Devens, Jonathan J. Harrington, AND Shauna L. Hillman
Annals 2008 149: 441-450. [ABSTRACT][SUMMARY][Full Text]

Oct 17, 2008

DNA sample Collection procedures.

(a) DNA samples will be collected, handled, preserved, and

submitted to the FBI in accordance with FBI guidelines.

(b) CSOSA has the authority to use such means as are reasonably

necessary to collect a sample from an individual who refuses to

cooperate in the collection of the sample. Unless CSOSA determines that

there are mitigating circumstances, CSOSA will consider that an

individual is refusing to cooperate if:

(1) The individual is being ordered or transferred to CSOSA's

supervision, but fails to report to CSOSA for collection of the sample

within 15 business days of being sentenced to probation or being

discharged from a correctional institution; or

(2) The individual is already under CSOSA supervision and has been

notified by his or her Community Supervision Officer of the time to

report for collection of the sample, but fails to report for collection

of the sample; or

(3) The individual has reported to CSOSA for collection of the

sample, but fails to provide the sample after being given a minimum of

one hour to do so; or

(4) The individual specifically states that he or she will not

cooperate.

(c) When an individual has refused to cooperate in the collection

of the sample, CSOSA deems the following to be reasonably necessary

means for obtaining the sample:

(1) Impose administrative sanctions;

(2) Request a revocation hearing by the releasing authority; and/or

(3) Refer the individual who refuses to cooperate for criminal

prosecution for a class A misdemeanor pursuant to section 4(a)(5) of

the DNA Analysis Backlog Elimination Act of 2000 (42 U.S.C.

14135b(a)(5)).

References:

STATE CRIME LABORATORY Chapter 10-17-01 DNA Analysis.

DNA identification information: collection.

DNA Identification in Mass Fatality Incidents

Genetic Privacy Act: File 5

DNA identification information: collection from certain offenders.

Application of dry storage matrices for DNA sample collection and preparation for forensic analysis.

DNA and Evidence Collection Principles

Robert E. Kramer

The dawn of a new age has arrived in law enforcement in the form of DNA research and testing. We in law enforcement, especially those of us working the crime scenes need to be aware of what we can do "in the field" to assure that proper evidence collection techniques are followed. Only then will the groundwork for successful evidence examinations be in place when we submit the case to a forensic laboratory for analysis.

Polymerase Chain Reaction

Polymerase Chain Reaction (PCR) is the DNA evidence analysis technique which is being practiced at the state laboratory at the Division of Criminal Investigation in Des Moines. PCR is a sensitive, fast, and highly discriminatory method of analysis. One of the most essential aspects of DNA evidence analysis at the lab is that a basis knowledge of evidence collection principles is necessary at the initial stage. PCR allows the criminalist to examine evidence which has been properly collected and preserved with expectations that accurate results will be found as result of the analysis.

Impact and Exchange

It is widely embraced within the law enforcement forensic field that, to at least some degree, the process of impact and exchange occurs at every crime scene. For example, a "run" vehicle impacts the accident scene and exchange occurs with the transfer of paint to the victim vehicle; a burglar impacts a scene with the approach of the area, and exchange occurs when footwear impressions are left behind. As law enforcement officers and crime scene specialists, it is our job to collect and preserve evidence at the scene - evidence which may not only connect the suspect to the scene - but connect the suspect to the incident itself.

Swab Method

The collection and preservation of evidence which will be subjected to DNA analysis is best accomplished by the seizure and submission of the original item. For example, it would be desirable to collect and submit undergarments worn after an incident involving suspected sexual assault rather than cutting or swabbing the specimen. Sometimes, however, the submission of the original item is impossible or impractical. Imagine a shooting or stabbing scene where there is evidence of considerable blood loss on a tile or linoleum floor. The practice of swabbing for the evidence is then practical for collection of possible DNA evidence.

It is preferred that swabs to be submitted to the D.C.I. Lab in Des Moines be made with cotton tipped swabs (ie: Q-tiptm). The process is simple, and the following outlines the procedure:

Slightly moisten a cotton tip swab with clean water.
concenrate the stain as much as possible.
avoid potential sample-to-sample contamination during the process.
avoid contamination by the collector (wear protective clothing).
if cotton balls are chosen as the collection medium, forceps used (if applicable) need to be cleaned thoroughly after each specimen.
(2) Air dry - NEVER use a hair drier.
(3) Package separately in paper (no plastic containers).
(4) Keep out of direct sunlight.

Eliminating the chances of cross, sample-to-sample, or collector contamination cannot be stressed enough. There are steps which can be taken in advance which will both: a) make the job easier, and b) reduce and possible eliminate that chance of evidence contamination.

Preparation is the key word when it comes to DNA evidence collection. You wouldn't wait until the night of a multi-thousand dollar safe burglary to order footwear casting and fingerprint supplies from the manufacturer would you? Some very low cost supplies can be obtained in advance which will "keep" for a considerable period of time. Paper, plastic, or wooden shafted swabs all work fine, but the durability of the wooden shaft swabs should be considered. A styrofoam block should be obtained and kept in your evidence collection kit. The wooden shaft swabs can be placed, shaft end down, in the block and allowed to dry. Prior to doing so, you may want to affix a piece of double side sticky tape on the bottom of the block to prevent it from tipping over as the swabs are attached to it. Small adhesive labels can be purchased and attached to the swab (prior to the sample being collected) which can be used to identify the swab. When the swabs are dry they should be placed in separate paper envelopes for preservation. Plain letter envelopes work well, although manilla or glycine envelopes are equally suitable.

The cotton swabs, a small glass jar (with a secure lid) of water, latex gloves, envelopes, stickers, a marker, and the styrofoam can be packaged neatly in a tackle box. (I prefer a $1.49 plastic pencil case purchased at the local discount department store). NOTE: In the interest of really saving time at the crime scene, package the swabs in individual envelopes in advance. This reduces handling the swab at the scene - and if using manilla envelopes, place the swab tip-side-down so that it may be removed from the envelope without handling the cotton end.

Tape Lift

Dried blood samples can be conveniently lifted from non-porous surfaces with conventional fingerprint tape. This process is beneficial in that the very size and shape of the stain may in fact be preserved on the lift. Of course, the lift should be placed sticky side down on a piece of plain white typing paper. It is suggested that paper be used (in lieu of plastic or fingerprint backing material) due to the fact that the paper will allow the specimen to "breath" As with the swab, the lift should be packaged in a separate envelope.

Control Samples

When conducting DNA analysis, the criminalist needs to have a "control" sample to compare with the suspect swab/evidence. For this reason, the crime scene examiner needs to document, collect, and preserve a control sample with the same care that the suspect sample is treated. For obvious reasons, it is suggested that the control sample be collected prior to the suspect sample. By collecting the control sample first, there is less chance of contaminating it with the blood or other biological fluid as the subsequent samples are being collected. Also make sure the same water is used to collect both the control and evidence samples. Finally, if cuttings of a suspected sample are being submitted for analysis (ie: a couch) it is preferred that the control samples also be cuttings, rather than swabs or merely fibers.

Other Evidence

Known biological specimens can be collected from both living and deceased persons easily, and we have been doing so for years in the form of sexual assault kit supplies. Known blood in quantity should be collected and preserved in one of the three following tubes:

Grey NaF (blood alcohol)
Purple (EDTA)
Yellow (ACD) sexual assault kit
Red top (plain) or green top (heparin) tubes SHOULD NOT BE USED.
Cheek swabs can be collected from individual and may in fact result in the discovery of some of the most highly concentrated DNA cells. The cheeks swab is non-threatening, in that the individual feels less intimidated by the process. The procedure is quick and simple:

A cotton tipped swab is scrubbed on the inside of the cheek.
No food or drink prior to twenty minutes of the collection.
Preferred that the technique no be used if the mouth is bleeding.

Deceased Individuals

Common sense and knowledge of previously approved practices seem to be the rule when deceased individuals are concerned, particularly when severe decomposition is present and blood work not practical. If hairs are to be submitted, make sure the collector obtain pulled hairs. The tissue associated with the hair root is needed in the DNA analysis. Other samples which may be suitable for DNA analysis include: bones (rib or long bones preferred), teeth, muscle tissue, and associated property which may be found with the body (hairbrush, toothbrush, etc.)

Questioned Evidence

The following are being submitted as miscellaneous tips which should be considered prior to and during the DNA evidence collection process....
positive considerations
saliva: cigarette butts, ski masks, envelopes, stamps.
seminal fluid: oral, rectal, vaginal swabs, clothing.
blood: (if the stain is visible - DNA results are likely)
hair
negative considerations
urine and feces.
biological samples contaminated with soil.
some substrates (jeans - denim) have proven to compromise DNA analysis.

Wear protective outer clothing, as well as the standard latex gloves. Since the crime scene examiner is subjected to exposure to elements, it is recommended that the outer clothing be changed upon returning to the scene after leaving.

Finally - maintain the samples at ambient conditions or cooler. Room temperature is acceptable, refrigeration is desirable, and freezing is preferred.

REMEMBER - practice common sense. Don't let the collection of biological evidence be intimidating. If sound procedures are followed, successful and thorough crime scene work can be accomplished in a safe manner, with valuable evidence in hand.

Sample protocol for material to be used in DNA barcoding

Effective DNA barcoding depends on the quality of the biological material. Following this simple sampling protocol will ensure proper preservation of biological samples for DNA studies.

For mammals, fish, birds and large invertebrates

1. Freeze whole individual specimens in plastic bags; use a write-on label to record vessel/expedition name/code, locality or station number, latitude and longitude, date, species name and collectors name. Store labelled specimens in freezer.

2. For large specimens that are impractical to freeze and return to the lab, take a small piece of muscle tissue from any location on the body (a half thumb size piece of muscle tissue) and freeze in a labelled clip-top mini-grip bag or a cryo-vial. Label the bag/vial with vessel name/code, locality or station number, date, species name, and name of scientist making the identification. Photograph the whole specimen before discarding, and cross reference the digital photo to the tissue sample code. It is essential that species-diagnostic characters can be seen on the photograph.

3. Avoid formalin work areas for handling specimens.

For small fish and invertebrates

1. Use 96% pure ethanol (~80-85% for fragile arthropods) for fixation and preservation. Do not use denaturised alcohol.

2. Label all samples with locality, coordinates, date and collector.

3. If sample contain considerable amount of water (e.g. kick samples etc.), exchange the sample liquid with fresh ethanol after a day or two if possible.

4. Always fill sample containers full with ethanol to avoid damage to material during transport. Record specimen collection data on a waxy paper label, use pencil. Add label to ethanol filled jar. Record the vessel/expedition name/code, locality or station number, date, species name, and name of scientist making the identification.

5. Keep samples cool and dark (to avoid DNA degradation).

If ethanol is impractical or unavailable in large amounts, the samples (or specimens) can be subsampled in ethanol (as above). Cross reference labelling with unique identifiers is important to link subsamples or tissue samples with primary samples.

Formaldehyde solutions degrade DNA. If samples must be fixed in formaldehyde, make sure that they are kept cool and transferred to ethanol as soon as possible (at the latest within 14 days). Also make sure that the ethanol is exchanged with fresh ethanol after a few days. Note the formalin fixation on the sample record

Specimens that must be kept dry for morphological studies (such as butterflies) should be kept frozen (at -20°C or lower temperatures) or quickly dried in an oven or incubator.

For vascular plants

High-quality DNA is most easily obtained from plants when the tissue is dried rapidly. Botanists now routinely use silica gel for field preservation of leaf material for DNA analysis. Silica gel can be purchased from most biological supply companies.

1. The ratio of silica gel to leaf tissue should be approximately 5-10:1. For best results, tissue should be completely dry within 24 hours.

2. Choose green, healthy leaves from a single individual plant. In general, a minimum of 2-3 square cm is necessary for 1-2 DNA extractions, but some small individuals will have less leaf material. A good rule of thumb to follow when deciding how much leaf material to sample is: more is always better.

3. Keep track of the individual from which you sampled leaf material. Small tags work well and they do not interfere with regular pressing activities. It is critical that voucher specimens be preserved from individuals that have associated material collected for DNA studies. A DNA sample that does not have an associated voucher specimen has extremely limited value in biological research.

4. Place the leaf tissue (or other green tissue if there is not a lot of leaf tissue available) into a small sealable bag with the silica gel. Tear or cut the leaf material into smaller pieces before inserting into the bag – this increases the surface area of the leaf that is exposed to the silica, and the drying process occurs more rapidly.

5. Write the collection number of the individual on a small piece of paper, and insert this into the Ziploc bag. Also write this information on the outside of the bag with a permanent marker.

6. Store the silica gel packets in a sealed bag or container to keep moisture out, and ensure that they do not get re-hydrated over time. For long term storage, silica gel packets can be stored in a freezer.