May 21, 2008

Selected Articles on Mutagenesis



MW Unger , SY Liu , and DE Rancourt

Transplacement mutagenesis: a novel in situ mutagenesis system using phage-plasmid recombination
Nucl. Acids Res. 27: 1480-1484.

Paul Gaytán , Jorge Yáñez , Filiberto Sánchez , and Xavier Soberón

Orthogonal combinatorial mutagenesis: a codon-level combinatorial mutagenesis method useful for low multiplicity and amino acid-scanning protocols
Nucl. Acids Res. 29: e9.

RD Kirsch , and E Joly

An improved PCR-mutagenesis strategy for two-site mutagenesis or sequence swapping between related genes
Nucl. Acids Res. 26: 1848-1850.

Qing Lin , Sarah L. Donahue , Tracy Moore-Jarrett , Shang Cao , Anna B. Osipovich , and H. Earl Ruley

Mutagenesis of diploid mammalian genes by gene entrapment
Nucleic Acids Research Advance Access published on November 6, 2006, DOI 10.1093/nar/gkl728.

Nucl. Acids Res. 34: e139.

Igor Shevelev , Giuseppina Blanca , Giuseppe Villani , Kristijan Ramadan , Silvio Spadari , Ulrich Hübscher , and Giovanni Maga

Mutagenesis of human DNA polymerase {lambda}: essential roles of Tyr505 and Phe506 for both DNA polymerase and terminal transferase activities
Nucl. Acids Res. 31: 6916-6925.

Jaesung Lee , and David L. Herrin

Mutagenesis of a light-regulated psbA intron reveals the importance of efficient splicing for photosynthetic growth
Nucl. Acids Res. 31: 4361-4372.

Michael O’Connor , Wyan-Ching Mimi Lee , Anuj Mankad , Catherine L. Squires , and Albert E. Dahlberg

Mutagenesis of the peptidyltransferase center of 23S rRNA: the invariant U2449 is dispensable
Nucl. Acids Res. 29: 710-715.

Eun Ju Lee , Joel Glasgow , Sew-Fen Leu , Ali O. Belduz , and James G. Harman

Mutagenesis of the cyclic AMP receptor protein of Escherichia coli: targeting positions 83, 127 and 128 the cyclic nucleotide binding pocket
Nucl. Acids Res. 22: 2894-2901.

M.J. Pillaire , A. Margot , G. Villani , A. Sarasin , M. Defias , and A. Gentil

Mutagenesis in monkey cells of a vector containing a single d(GPG) cis-diamminedichloroplatinum(ll) adduct placed on codon 13 of the human H-ras proto-oncogen
Nucl. Acids Res. 22: 2519-2524.

Pamela Anderson , Joseph Monforte , Richard Tritz , Steven Nesbitt , John Hearst , and Arnold Hamper

Mutagenesis of the hairpin ribozyme
Nucl. Acids Res. 22: 1096-1100.

Huey-Nan Wu , Jun-YU Lee , Huey-Wen Huang , Yi-shuian Huang , and Tung-Guang Hsueh

Mutagenesis analysis of a hepatitis delta virus genomic ribozyme
Nucl. Acids Res. 21: 4193-4199.

Ali O. Belduz , Eun Ju Lee , and James G. Harman

Mutagenesis of the cyclic AMP receptor protein of Escherichia coli targeting positions 72 and 82 of the cyclic nucleotide binding pocket
Nucl. Acids Res. 21: 1827-1835.

Huey-Nan Wu , and Zhi-Shun Huang

Mutagenesis analysis of the self-cleavage domain of hepatitis delta virus antigenomic RNA
Nucl. Acids Res. 20: 5937-5941.

V. Pletsa , A. Gentil , A. Margot , J. Armier , S.A. Kyrtopoulos , and A. Sarasin

Mutagenesis by 06 meG residues within codon 12 of the human Ha-ras proto-oncogene in monkey cells
Nucl. Acids Res. 20: 4897-4901.

Akira Sekiguchi , Yasuo Komatsu , Makoto Koizumi , and Eiko Ohtsuka

Mutagenesis and self-ligation of the self-cleavage domain of the satellite RNA minus strand of tobacco rinspot virus and its binding to polyamines
Nucl. Acids Res. 19: 6833-6838.

Aidan J. Doherty , Andrew F. Worall , and Bernard A. Connolly

Mutagenesis of the DNA binding residues in bovine pancreatic DNase1: an investigation into the mechanism of sequence discrimination by a sequence selective nuclease
Nucl. Acids Res. 19: 6129-6132.

Christian Baron , Johann Heider , and August Böck

Mutagenesis of selC, the gene for the selenocysteine-insertlng tRNA-species in E.coli: effects on in vivo function
Nucl. Acids Res. 18: 6761-6766.

Candice C. Sheldon , and Robert H. Symons

Mutagenesis analysis of a self-cleaving RNA
Nucl. Acids Res. 17: 5679-5685.

Jacques Piette , Howard B. Gamper , Albert Van de Vorst , and John E. Hearst

Mutagenesis induced by site specifically placed 4'-hydroxymethyl-4,5',8-trimethylpsoralen adducts
Nucl. Acids Res. 16: 9961-9977.

G. Chua , L. Taricani , W. Stangle , and P. G. Young

Insertional mutagenesis based on illegitimate recombination in Schizosaccharomyces pombe
Nucl. Acids Res. 28: e53.

MJ Singer , MA Podyminogin , MA Metcalf , MW Reed , DA Brown , HB Gamper , RB Meyer , and RM Wydro

Targeted mutagenesis of DNA with alkylating RecA assisted oligonucleotides
Nucl. Acids Res. 27: e38.

A Melnikov , and PJ Youngman

Random mutagenesis by recombinational capture of PCR products in Bacillus subtilis and Acinetobacter calcoaceticus
Nucl. Acids Res. 27: 1056-1062.

RM Tucker , and DT Burke

Directed mutagenesis of YAC-cloned DNA using a rapid, PCR-based screening protocol
Nucl. Acids Res. 24: 3467-3468.

David P. Siderovski , Toshifumi Matsuyama , Elena Frigerio , Stephen Chui , Xia Min , Heather Erfle , Martin Sumner-Smith , Richard W. Bamett , and Tak W. Mak

Random mutagenesis of the human immunodeficiency virus type-1 frans-activator of transcription (HIV-1 Tat)
Nucl. Acids Res. 20: 5311-5320.

Xiubei Liao , David Selinger , Steven Althoff , Anne Chiang , Diana Hamilton , Min Ma , and Jo Ann Wise

Random mutagenesis of Schizosaccharomyces pombe SRP RNA: lethal and conditional lesions cluster in presumptive protein binding sites
Nucl. Acids Res. 20: 1607-1615.

Yuhong Zhou , Xiaoping Zhang , and Richard H. Ebright

Random mutagenesis of gene-sized DNA molecules by use of PCR with Taq DNA polymerase
Nucl. Acids Res. 19: 6052.

Bruno A. Gaëta , Stephen J. Sharp , and Thomas S. Stewart

Saturation mutagenesis of the Drosophila tRNAArg gene B-Box intragenic promoter element: requirements for transcription activation and stable complex formation
Nucl. Acids Res. 18: 1541-1548.

Laurent Dulau , Alain Cheyrou , and Michel Aigle

Directed mutagenesis using PCR
Nucl. Acids Res. 17: 2873.

John M. Hinz , Robert S. Tebbs , Paul F. Wilson , Peter B. Nham , Edmund P. Salazar , Hatsumi Nagasawa , Salustra S. Urbin , Joel S. Bedford , and Larry H. Thompson

Repression of mutagenesis by Rad51D-mediated homologous recombination
Nucl. Acids Res. 34: 1358-1368.

Tuck Seng Wong , Kang Lan Tee , Berhard Hauer , and Ulrich Schwaneberg

Sequence saturation mutagenesis (SeSaM): a novel method for directed evolution
Nucl. Acids Res. 32: e26.

Gordana Maravic , Janusz M. Bujnicki , Marcin Feder , Sándor Pongor , and Mirna Flögel

Alanine-scanning mutagenesis of the predicted rRNA-binding domain of ErmC' redefines the substrate-binding site and suggests a model for protein–RNA interactions
Nucl. Acids Res. 31: 4941-4949.

Fumi Nagatsugi , Shigeki Sasaki , Paul S. Miller , and Michael M. Seidman

Site-specific mutagenesis by triple helix-forming oligonucleotides containing a reactive nucleoside analog
Nucl. Acids Res. 31: e31.

Assen Marintchev , Michael R. Gryk , and Gregory P. Mullen

Site-directed mutagenesis analysis of the structural interaction of the single-strand-break repair protein, X-ray cross-complementing group 1, with DNA polymerase ß
Nucl. Acids Res. 31: 580-588.

P. Soultanas , and D. B. Wigley

Site-directed mutagenesis reveals roles for conserved amino acid residues in the hexameric DNA helicase DnaB from Bacillus stearothermophilus
Nucl. Acids Res. 30: 4051-4060.

MS Dillingham , P Soultanas , and DB Wigley

Site-directed mutagenesis of motif III in PcrA helicase reveals a role in coupling ATP hydrolysis to strand separation
Nucl. Acids Res. 27: 3310-3317.

P Neuner , R Cortese , and P Monaci

Codon-based mutagenesis using dimer-phosphoramidites
Nucl. Acids Res. 26: 1223-1227.

B Hallet , DJ Sherratt , and F Hayes

Pentapeptide scanning mutagenesis: random insertion of a variable five amino acid cassette in a target protein
Nucl. Acids Res. 25: 1866-1867.

W Wu , C Palaniappan , RA Bambara , and PJ Fay

Differences in mutagenesis during minus strand, plus strand and strand transfer (recombination) synthesis of the HIV-1 gene in vitro
Nucl. Acids Res. 24: 1710-1718.

Gil Barzilay , Lisa J. Walker , Craig N. Robson , and Ian D. Hickson

Site-directed mutagenesis of the human DNA repair enzyme HAP1: identification of residues important for AP endonuclease and RNase H activity
Nucl. Acids Res. 23: 1544-1550.

Chung-Nam Chung , Yasushi Hamaguchi , Tasuku Honjo , and Masashi Kawaichi

Site-directed mutagenesis study on DNA binding regions of the mouse homologue of Suppressor of Hairless, RBP-Jx
Nucl. Acids Res. 22: 2938-2944.

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